{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Calculating the pairwise RMSD of a trajectory\n", "\n", "**Last executed:** Feb 06, 2020 with MDAnalysis 0.20.2-dev0\n", "\n", "**Last updated:** January 2020\n", "\n", "**Minimum version of MDAnalysis:** 0.17.0\n", "\n", "**Packages required:**\n", " \n", "* MDAnalysis (Michaud-Agrawal *et al.*, 2011, Gowers *et al.*, 2016)\n", "* MDAnalysisTests\n", " \n", "**Optional packages for data visualisation:**\n", "\n", "* matplotlib\n", "\n", "